Ponderings in Diagon Alley

Exploring the world of genomics, R and cloud computing

Nextflow on AWS Batch with Fusion

Nextflow
AWS
Batch
Fusion
Wave
An updated guide to setting up Nextflow on AWS Batch with fusion file storage
Nov 18, 2024
LW Pembleton

Building With Resume

Nextflow
Bioinformatics
A guide to using the resume function in Nextflow to modularly build pipelines
Nov 13, 2024
LW Pembleton

Know your limits

R
Visualisation
ggplot2
A brief walkthrough the consequences of different limits functions in ggplot2
Jun 10, 2024
LW Pembleton

Remote IDE behind a jump server

Cloud
AWS
VSCode
WinSCP
IDE
Remote
Jump host
A guide to setting up a VSCode development environment along with WinSCP for a remote server behind a jump host
Jun 2, 2024
LW Pembleton

Finding the right mulled biocontainer

Mulled
Docker
Containers
Bioinformatics
A guide to finding mulled biocontaienrs for your desired tool chain
Mar 17, 2024
LW Pembleton

Packing for AWS Batch EC2

Batch
EC2
AWS
Nextflow
An guide for selecting resource allocations on AWS Batch EC2
Jan 23, 2024
LW Pembleton

EC2 Village

EC2
AWS
Bioinformatics
S3
A collection of mini guides, tips and tricks to using EC2 instances focused on bioinformatics
Dec 14, 2023
LW Pembleton

Navigating EC2 Pricing - The Better Way

EC2
AWS
Bioinformatics
An interative visual analysis of EC2 instance prices for better informed selection
Nov 18, 2023
LW Pembleton

Streamlining Your AWS CLI S3 File Operations

AWS
S3
A guide to using the AWS Command Line Interface to interact with S3
Sep 25, 2023
LW Pembleton

Pushing Docker Images to AWS ECR

Docker
AWS
ECR
A guide to transfer your docker images to your private AWS container repository
Sep 24, 2023
LW Pembleton

Annotate equations

equations
quarto
annotate
LaTeX
A guide to annotating equations in quarto documents
Sep 3, 2023
LW Pembleton

How to Cast Blue Iris UI3

Smarthome
Blue Iris
Security
Chromecast
A guide to casting Blue Iris UI3 to a Chromecast device and monitor
Aug 28, 2023
LW Pembleton

GitHub Deploy Keys

github
git
ssh key
AWS
remote
cloud
A guide to using GitHub deploy keys to deploy private repos in remote compute sessions
Jul 3, 2023
LW Pembleton

Screen Utility and Terminal Multiplexing

Screen
AWS
Terminal
A guide to using the screen command in remote sessions
May 23, 2023
LW Pembleton

Endpoints for AWS VPC

AWS
Endpoints
Gateway
Batch
A guide to setting up endpoints for your AWS VPC
May 18, 2023
LW Pembleton

EBS Auto-scaling on AWS Batch

Nextflow
AWS
Batch
EBS
An introductory guide to setting up EBS auto-scaling on AWS Batch for use in Nextflow
Feb 3, 2023
LW Pembleton

Nextflow on AWS Batch

Nextflow
AWS
Batch
An introductory guide to setting up Nextflow with AWS Batch
Nov 25, 2022
LW Pembleton
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